The Office of the Division Clerks of Court is under the direct control and supervision of the Chairman of the Division. It takes charge of the pre- and post-adjudicative matters relative to cases brought to the Court.

The Accounting Division takes charge of accounting and monitoring of all court financial transactions, revenues, collections, and remittance. Its functions include general supervision and administrative control of activities in financing, budgeting, accounting, collections, and other related matters, including processing and control of staff salaries and other financial concerns.

The Court of Appeals Cash Division manages both collection and disbursement of funds. It collects all docket, other legal fees and other court collections and issues official receipts for each transaction, including payments made through the Judiciary Electronic Payment Solution (JePS). Daily collections are deposited to the Land Bank of the Philippines, the Court's Authorized Government Depository Bank (AGDB). The Division prepares monthly Reports on Collections and Deposits (RCD) with copies of the issued official receipts and its deposit slips. For disbursements, the Cash Division takes charge of all the processed and approved vouchers for payment. Payments includes check issuances and disbursements through List of Due and Demandable Accounts Payable-Advice to Debit Accounts (LDDAP-ADA) via manual and Electronic Manual Disbursement System/eMDS). The Division also prepares all disbursement reports through the Report of Check Issued (RCI) and Report of Advice to Debit Account Issued (RADAI).

The Fiscal Management and Budget Division prepares and executes the annual budget of the Court, initiates plans and budget preparation for better utilization of Court funds, and fiscalizes the Court's financial interest to cover budget deficiencies and perform corrective measures as needed. It prepares reports as required by the Department of Budget and Management, Commission Audit, and other government agencies. It is in charge of budget allotment and control for the Court, and provides advise and assistance to the Court on the status of appropriations, allotment, and such other financial matters as maybe needed.

The General Services Division is in charge of Court buildings, grounds, and facilities. It supervises the janitorial agency maintaining the court premises, coordinates with other government agencies and private entities on major repairs and services, and sends out official court notices and processes by mail or personal deliveries.

The Information and Statistical Data Division serves as the center for systematic exchange or dissemination of information about the Court. It renders prompt, sincere, and accurate case information service assistance to the public; collates information from the offices of the Justices; and submits to the Office of the Court Administrator and other requesting government agencies monthly, quarterly, semi-annual, and annual statistical reports on case accomplishments, case load, and case disposal.

The Judicial Records Division takes charge of case docketing activities like receiving, compiling, processing, and reporting all pleadings necessary for the proper adjudication of appealed judicial cases, whether civil or criminal in nature, and original actions falling under the jurisdiction of the Court of Appeals. It administers records keeping policies, procedures, and techniques; implements and evaluates programs for the systematic management of judicial records; prepares entries of judgment; and maintains systematic filing and records keeping. It is also in charge of remanding decided cases to the court of origin, and acts as case records custodian for the Court.

The Library Services Division assists the Presiding Justice, Associate Justices, officials and lawyers of the Court, including private practicing attorneys, in their legal research tasks; is in charge of acquisition, inventory, and distribution of all law book collections, law journals and the like to the Presiding Justice and the Associate Justices.

The Management Information Systems Division is in charge of all information and communications technology needs of the Court; provides I.T. technical services on computers and peripheral equipment, and printers to enable employees to be more productive in executing their responsibilities; provides support to court operations through application development and maintenance to improve the efficiency of legal, financial, medical and administrative processes; provides information technology resources to help protect the confidentiality, integrity, and availability of the Court's electronic data, computer systems, and networks.

The Medical and Dental Services Division attends to the health needs of all justices, officials, and employees of the Court through free medical and dental consultation and treatment, pre-employment physical examinations, laboratory tests including electrocardiogram (ECG) and certain modalities of physical therapy. Medications for commonly occurring ailments are dispensed free to sick employees. It is also in charge of the CA Health and Welfare Plan available to all Justices, court officials and employees alike.

The Human Resources Management Division provides essential support services to the Court through personnel administration and management, human resource training and development, administration of leave matters, employees' welfare and benefits, retirement and personnel discipline. It also attends to personnel actions such as appointment, recruitment, promotion, transfer, re-employment, detail, demotion, retirement and separation and is also in charge of Court plantilla, notice of salary adjustment and step increments.

The Procurement Management Division oversees the acquisition of goods, services, and contracts for the court. It ensures compliance with procurement policies, negotiates contracts, and promotes cost-effective purchasing. The division also focuses on vendor management, competitive bidding, and maintaining transparency, while delivering efficient support for the organization's operational needs.